Presence/absence Matrix Construction

Presenceabsence matrix of antimicrobial resistance genes among ST258

Heatmaps constructed using the binary gene presenceabsence matrix of

2 Cluster analysis process The presenceabsence matrix is used to

Hierarchical cluster analysis using the presenceabsence matrix of

Gene presenceabsence matrix from pangenome analysis of 123 E coli

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Presenceabsence matrix of genes associated with adaptation and

Heatmap generated from the species presenceabsence matrix for the

Presenceabsence matrix of accessory genes of ESBLproducing clinical

Principal Components Analysis of a presenceabsence matrix of 60

Dendrogram generated by cluster analysis of a presenceabsence matrix

Clusters presenceabsence variation Matrix shows presenceabsence of

A Presenceabsence matrix for each Lepidopteranspecific miRNA

Turn BLAST results into a presenceabsence matrix by H Auguste

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The presenceabsence matrix MDN of N plots per S DN values Notice that

Presenceabsence matrix of antimicrobial resistance genes among ST258

a NMDS data ordinations plot using a presenceabsence matrix for the

Presenceabsence matrix of genes involved in LPS synthesis Presence

Matrix of potential outcomes in the validation of a presenceabsence

Left NMDS data ordinations plot using a presenceabsence matrix for

The presenceabsence matrix MDN of N plots per S DN values Notice that

Dendrogram generated by cluster analysis of a presenceabsence matrix

Sample contingency table matrix for comparing the presenceabsence of

Cluster resulting from presenceabsence matrix showing resemblance

Shade plot for algal communities based on presenceabsence matrix in

Phylogenetic profile with a presenceabsence matrix of all genes in the

4 Presenceabsence matrix of compounds n169 contained in TGS for

Factor Analysis of presenceabsence data matrix for 2070 species

PresenceAbsence matrix of MPF F conjugation genes in Group A

Presenceabsence matrix and dendrogram cluster showing the

Presenceabsence matrix of antimicrobial resistance genes and

Presenceabsence matrix of accessory genes of ESBLproducing clinical

8 x 3 PresenceAbsence Matrix for the Galois Lattice Shown in Figure 14

E coli ST182 pangenome A Gene presenceabsence matrix clustered

Presenceabsence matrix for durable rust resistance genes in parents

Presenceabsence matrix of genes involved in iron acquisition Presence

Presenceabsence matrix for terrestrial molluscs in the 13 samples from

Cluster tree based on species presenceabsence matrix and generated

Presenceabsence matrix and dendrogram cluster showing the

Biplot resulting from the CA using the presenceabsence matrix of the

Redundancy analysis of polar metabolites and a presenceabsence matrix

Cluster resulting from presenceabsence matrix showing resemblance

Figure S3 Cladogram build with the gene presenceabsence matrix of the

E coli ST182 pangenome A Gene presenceabsence matrix clustered

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A visualization of the absencepresence matrix produced by Roary On

A schematic of the Panstripe algorithm A binary gene presenceabsence

Coregenome SNP phylogeny and gene presenceabsence matrix of 70 K

Confusion matrix for the evaluation of our presenceabsence model

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Presence absence matrix with dendrogram of effectors identified in 147

Presenceabsence matrix for twelve species of marsupials and rodents in

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a Species presenceabsence cooccurrence matrix based on our

Presence and absence matrix of different virulence factors among known

Cluster analysis based on a binary presenceabsence matrix of the

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Absencepresence matrix of shared synteny blocks among several

PCoA ordination of A the ephemeropteran presenceabsence matrix

Presence or absence matrix of the 113 restrictionmodification systems

Presenceabsence matrix calculated for ve fossil three subfossil and

Schematic representation of a presenceabsence gene matrix Genomes are

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Presenceabsence matrix for all resident forestinterior birds

Absencepresence matrix and hierarchical clustering of the screened

Presenceabsence matrix to visualize parallel resistance in 332

Presenceabsence matrix for the esterase zymogram of various accessions

Matrix presence dark square and absence white square of the

Presenceabsence matrix for all resident forestinterior birds

Maximally ordered species presenceabsence matrix for 30 floodplain

NMDS of pitfall trap data and sifting data based on presenceabsence

Absencepresence matrix of selected biosynthetic families across the

Compositional differences PCoA a from the presenceabsence matrix

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Clustered heatmap generated using a presenceabsence data matrix of

Multiple correspondence analysis MCA based on presenceabsence matrix

Cluster analysis based on a binary presenceabsence matrix of the

Responses on the deconstruction and presenceabsence of plural

Maximally ordered species presence absence matrix for a

PCoA ordination of A the ephemeropteran presenceabsence matrix

Presence black squares I absence white squares matrix and

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PresenceAbsence Tools

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